SmbA [392519-25362]

Representation Video Format
Ribbon MultiGif
CA trace
Ball-and-Stick

Other visual representations:
Create new custom MPEG of this morph Color protein by motion
View interpolation animated in Protein Explorer
(Rotate, color, render as desired. Requires PC/Mac, Chime)
Color protein by nma flexibility
View as Flickerbook Page in Adobe PDF 1.2 Color protein by b-factors
3D jmol viewer (NEW!)

Downloads and other analyses:
Download interpolation as tar'red and gzipped PDB file Torsion angle analysis of morph
Download interpolation as gzip'ped NMR format PDB file Proflex Analysis
Helical interaction analysis of first or last frame.  


Statistics generated for this morph [ help page ]
Display percentiles for rankable statistics versus morph set: check 1
Rankable statistics:
2ndCoreCAs 141
2ndCoreRMS 6.90066
2ndCoreRMSpostrefitting 5.86369
AlignedCoreCAs 142
AlignedCoreRMS 0.231152
Max2ndCoreDeviation 29.3486
MaxCoreDeviation 0.352705
MaxOverallDeviation 29.3486
Min2ndCoreDeviation 0.359713
MinCoreDeviation 0.0477948
MinOverallDeviation 0.0477948
RMSoverall 4.87362
kappa 8.69181
natoms 2322
nresidues 298
translation 0.405244
Other information:
Hinge000X -3.69359
Hinge000Y -1.5181
Hinge000Z 8.47777
Hinge000res 217:230
Hinge000seq ALA LEU THR GLU PRO SER LEU ALA THR VAL ARG VAL THR ALA
Hinge000x0dist 12.9148
NHingeWindow 14
NHinges 1
TransX -0.148568
TransY -0.0306264
TransZ 0.375782
hetero  
inframes 2
inputchain0 A
inputchain1 A
inputframe0 webupload1.pdb
inputframe1 webupload2.pdb
max_x_or_y 57.48
movie_id 392519-25362
movie_type Yale
nhetatoms  
nhets 0
nresatoms 2322
outframes 10
prelimsscore nan
private N
protein_name SmbA
submitted-by Badri Dubey
submitted-date Tue Nov 3 01:44:24 PST 2020
submitted-email bndubeyhhu@gmail.com
x0ToCentroidDistance 16.1316
x0X -5.91339
x0Y -4.98045
x0Z -14.1582

Alignment of Protein Structures from Amino Acids in their SEQRES decks:

View alignment as nicely formated Alscript page (PDF format)

1>P1;webupload2.pdb.....1..RYRPFGSTGVAVSALTLRLADNPRLRANDWRALVFTALENGVNSFQIDGDAPELLKGAGEAFASVERHLLFLTWRLRGDAKQLGPHTLDALKRSAFEGL
2>P1;webupload1.pdb.....1.MRYRPFGSTGVAVSALTLRLADNPRLRANDWRALVFTALENGVNSFQIDGDAPELLKGAGEAFASVERHLLFLTWRLRGDAKQLGPHTLDALKRSAFEGL

1>P1;webupload2.pdb...101.SLDYLDLLLINDPQSASLPXAFESGLQDLQKGRALRGLGVASRGDIDPGLLANDLVTAVSSPYNLSSGWAERHRIRQASQNNFAVIGEDFWPQALREVXX
2>P1;webupload1.pdb...101.SLDYLDLLLINDPQSASLPMAFESGLQDLQKGRALRGLGVASRGDIDPGLLANDLVTAVSSPYNLSSGWAERHRIRQASQNNFAVIGEDFWPQALREVAD

1>P1;webupload2.pdb...201.XXXXKPSFWQRRTDPLADVGGYEFLTNTPGWSAEDICLGYALTEPSLATVRVTADNRQEIERLAAVVERDLPTGVCAQIEXARFSAQEREKAARRPKLAA
2>P1;webupload1.pdb...201.KAPPKPSFWQRRTDPLADVGGYEFLTNTPGWSAEDICLGYALTEPSLATVRVTADNRQEIERLAAVVERDLPTGVCAQIEMARFSAQEREKAARRPKLAA

1>P1;webupload2.pdb...301.ALEHHHH..
2>P1;webupload1.pdb...301.ALEHHHHHH

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Copyright 1995-2005 M. Gerstein, W. Krebs, S. Flores, N. Echols, and others
Email: Mark.Gerstein _at_ yale.edu