## Description of morph statistics:

Click on a field name for a more complete entry

Field NameRankable?TypeShort Description2ndCoreCAs Y int(11) Number of C-alphas in 2nd core 2ndCoreRMS Y float RMS of 2nd core after fitting on 1st core 2ndCoreRMSpostrefitting Y float RMS of 2nd core, without fitting 1st core AlignedCoreCAs Y int(11) Number of C-alphas in 1st core AlignedCoreRMS Y float RMS of 1st core avg_energy Y float Average CHARMM energy of intermediate frames dAlpMax Y float Maximum change in Alpha torsion angle dPhiMax Y float Maximum change in Phi torsion angle dPsiMax Y float Maximum change in Psi torsion angle kappa Y float Rotation in fit of 2nd core after fit of 1st core len1_n Y int(11) Length of 1st protein sequence len2_n Y int(11) Length of 2nd protein sequence Max2ndCoreDeviation Y float Max C-alpha displacement in 2nd Core MaxCoreDeviation Y float Max C-alpha displacement in 1st Core MaxOverallDeviation Y float Overall max C-alpha displacement Min2ndCoreDeviation Y float Min C-alpha displacement in 2nd Core MinCoreDeviation Y float Min C-alpha displacement in 1st Core MinOverallDeviation Y float Overall min C-alpha displacement natoms Y int(11) Total number of atoms nresidues Y int(11) Number of residues Ntrim_n Y int(11) Number of alpha-Carbons left after trimming RMSoverall Y float RMS of entire structure with 1st core fitted translation Y float Translation in fit of 2nd core after fit of 1st core CAatoms N int(11) Number of C-alpha atoms count N int(11) description depth N varchar(10) description did N varchar(10) description dispmax N float Largest normal mode displacement fami N varchar(18) description FreqDispmax N float Frequency of mode with largest displacement FrequencyOfBiggestMode N float Frequency of largest mode (SVD calculation) gaps_n N int(11) Number of gaps in the alignment gid_ N varchar(10) description hetero N varchar(10) 1 if hetero atoms are included, 0 if not info N float Mode concentration inframes N int(11) Number of PDB IDs InternalNumberOfBiggestMode N int(11) - istep N int(11) description itotal N int(11) description max_x_or_y N float Size (in terms of window for rendering) movietype N varchar(10) The type of the movies nCutoff N int(11) Number of cutoffs nhetatoms N int(11) Number of hetero atoms nhets N int(11) Number of hetero atoms NHinges N int(11) Number of putative hinges detected NHingeWindow N int(11) Window size for hinge detection nModes N int(11) Number of modes norm0 N float Maximum value of the SVD displacement vector (unitless) norm1 N float Mean of the SVD displacement vector (unitless) norm2 N float Root-mean-square of the SVD displacement vector (unitless) nresatoms N int(11) Number of residue atoms pid_f N float description prelimsscore N int(11) description private N char(1) Whether the morph_id is private or not Prms_f N float description Prms_trim_f N float description Pseq_fN_n N int(11) description Pstr_f N float description Pstr_trim_f N float description rankdispmax N int(11) description RankOfBiggestMode N int(11) - residuals N float Euclidean length of the residual difference between the atomic displacements rmsampdisp N float description rmsampsvd N float description RMS_f N float description RMS_trim_f N float description s N int(11) description scorr N float S-correlation: Normal mode statistic screwAxisToCentroidDistance N float description screwAxisX N float description screwAxisY N float description screwAxisZ N float description seqident N float Sequence identity Sstr_f N float description Sstr_trim_f N float description submitted_by N varchar(12) The submitter of the morph_id submitted_email N varchar(30) The email of the submitter SWS_n N float Smith-Waterman score for alignment TransX N float X component of "translation" statistic TransY N float Y component of "translation" statistic TransZ N float Z component of "translation" statistic x0ToCentroidDistance N float Distance between screw-axis (x0) & centroid x0X N float X component of "x0ToCentroidDistance" statistic x0Y N float Y component of "x0ToCentroidDistance" statistic x0Z N float Z component of "x0ToCentroidDistance" statistic

Copyright 1995-2005 M. Gerstein, W. Krebs, S. Flores, N. Echols, and others

Email: Mark.Gerstein _at_ yale.edu