Description of morph statistics:


Click on a field name for a more complete entry
Field Name Rankable? Type Short Description
2ndCoreCAs Y int(11) Number of C-alphas in 2nd core
2ndCoreRMS Y float RMS of 2nd core after fitting on 1st core
2ndCoreRMSpostrefitting Y float RMS of 2nd core, without fitting 1st core
AlignedCoreCAs Y int(11) Number of C-alphas in 1st core
AlignedCoreRMS Y float RMS of 1st core
avg_energy Y float Average CHARMM energy of intermediate frames
dAlpMax Y float Maximum change in Alpha torsion angle
dPhiMax Y float Maximum change in Phi torsion angle
dPsiMax Y float Maximum change in Psi torsion angle
kappa Y float Rotation in fit of 2nd core after fit of 1st core
len1_n Y int(11) Length of 1st protein sequence
len2_n Y int(11) Length of 2nd protein sequence
Max2ndCoreDeviation Y float Max C-alpha displacement in 2nd Core
MaxCoreDeviation Y float Max C-alpha displacement in 1st Core
MaxOverallDeviation Y float Overall max C-alpha displacement
Min2ndCoreDeviation Y float Min C-alpha displacement in 2nd Core
MinCoreDeviation Y float Min C-alpha displacement in 1st Core
MinOverallDeviation Y float Overall min C-alpha displacement
natoms Y int(11) Total number of atoms
nresidues Y int(11) Number of residues
Ntrim_n Y int(11) Number of alpha-Carbons left after trimming
RMSoverall Y float RMS of entire structure with 1st core fitted
translation Y float Translation in fit of 2nd core after fit of 1st core
CAatoms N int(11) Number of C-alpha atoms
count N int(11) description
depth N varchar(10) description
did N varchar(10) description
dispmax N float Largest normal mode displacement
fami N varchar(18) description
FreqDispmax N float Frequency of mode with largest displacement
FrequencyOfBiggestMode N float Frequency of largest mode (SVD calculation)
gaps_n N int(11) Number of gaps in the alignment
gid_ N varchar(10) description
hetero N varchar(10) 1 if hetero atoms are included, 0 if not
info N float Mode concentration
inframes N int(11) Number of PDB IDs
InternalNumberOfBiggestMode N int(11) -
istep N int(11) description
itotal N int(11) description
max_x_or_y N float Size (in terms of window for rendering)
movietype N varchar(10) The type of the movies
nCutoff N int(11) Number of cutoffs
nhetatoms N int(11) Number of hetero atoms
nhets N int(11) Number of hetero atoms
NHinges N int(11) Number of putative hinges detected
NHingeWindow N int(11) Window size for hinge detection
nModes N int(11) Number of modes
norm0 N float Maximum value of the SVD displacement vector (unitless)
norm1 N float Mean of the SVD displacement vector (unitless)
norm2 N float Root-mean-square of the SVD displacement vector (unitless)
nresatoms N int(11) Number of residue atoms
pid_f N float description
prelimsscore N int(11) description
private N char(1) Whether the morph_id is private or not
Prms_f N float description
Prms_trim_f N float description
Pseq_fN_n N int(11) description
Pstr_f N float description
Pstr_trim_f N float description
rankdispmax N int(11) description
RankOfBiggestMode N int(11) -
residuals N float Euclidean length of the residual difference between the atomic displacements
rmsampdisp N float description
rmsampsvd N float description
RMS_f N float description
RMS_trim_f N float description
s N int(11) description
scorr N float S-correlation: Normal mode statistic
screwAxisToCentroidDistance N float description
screwAxisX N float description
screwAxisY N float description
screwAxisZ N float description
seqident N float Sequence identity
Sstr_f N float description
Sstr_trim_f N float description
submitted_by N varchar(12) The submitter of the morph_id
submitted_email N varchar(30) The email of the submitter
SWS_n N float Smith-Waterman score for alignment
TransX N float X component of "translation" statistic
TransY N float Y component of "translation" statistic
TransZ N float Z component of "translation" statistic
x0ToCentroidDistance N float Distance between screw-axis (x0) & centroid
x0X N float X component of "x0ToCentroidDistance" statistic
x0Y N float Y component of "x0ToCentroidDistance" statistic
x0Z N float Z component of "x0ToCentroidDistance" statistic

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Copyright 1995-2005 M. Gerstein, W. Krebs, S. Flores, N. Echols, and others
Email: Mark.Gerstein _at_ yale.edu