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Description of morph statistics:
Click on a field name for a more complete entry
Field Name Rankable? Type Short Description 2ndCoreCAs Y ? Number of C-alphas in 2nd core 2ndCoreRMS Y ? RMS of 2nd core after fitting on 1st core 2ndCoreRMSpostrefitting Y ? RMS of 2nd core, without fitting 1st core AlignedCoreCAs Y ? Number of C-alphas in 1st core AlignedCoreRMS Y ? RMS of 1st core avg_energy Y ? Average CHARMM energy of intermediate frames dAlpMax Y ? Maximum change in Alpha torsion angle dPhiMax Y ? Maximum change in Phi torsion angle dPsiMax Y ? Maximum change in Psi torsion angle kappa Y ? Rotation in fit of 2nd core after fit of 1st core len1_n Y ? Length of 1st protein sequence len2_n Y ? Length of 2nd protein sequence Max2ndCoreDeviation Y ? Max C-alpha displacement in 2nd Core MaxCoreDeviation Y ? Max C-alpha displacement in 1st Core MaxOverallDeviation Y ? Overall max C-alpha displacement Min2ndCoreDeviation Y ? Min C-alpha displacement in 2nd Core MinCoreDeviation Y ? Min C-alpha displacement in 1st Core MinOverallDeviation Y ? Overall min C-alpha displacement natoms Y ? Total number of atoms nresidues Y ? Number of residues Ntrim_n Y ? Number of alpha-Carbons left after trimming RMSoverall Y ? RMS of entire structure with 1st core fitted translation Y ? Translation in fit of 2nd core after fit of 1st core CAatoms N ? Number of C-alpha atoms count N ? description depth N ? description did N ? description dispmax N ? Largest normal mode displacement fami N ? description FreqDispmax N ? Frequency of mode with largest displacement FrequencyOfBiggestMode N ? Frequency of largest mode (SVD calculation) gaps_n N ? Number of gaps in the alignment gid_ N ? description hetero N ? 1 if hetero atoms are included, 0 if not info N ? Mode concentration inframes N ? Number of PDB IDs InternalNumberOfBiggestMode N ? - istep N ? description itotal N ? description max_x_or_y N ? Size (in terms of window for rendering) movietype N ? The type of the movies nCutoff N ? Number of cutoffs nhetatoms N ? Number of hetero atoms nhets N ? Number of hetero atoms NHinges N ? Number of putative hinges detected NHingeWindow N ? Window size for hinge detection nModes N ? Number of modes norm0 N ? Maximum value of the SVD displacement vector (unitless) norm1 N ? Mean of the SVD displacement vector (unitless) norm2 N ? Root-mean-square of the SVD displacement vector (unitless) nresatoms N ? Number of residue atoms pid_f N ? description prelimsscore N ? description private N ? Whether the morph_id is private or not Prms_f N ? description Prms_trim_f N ? description Pseq_fN_n N ? description Pstr_f N ? description Pstr_trim_f N ? description rankdispmax N ? description RankOfBiggestMode N ? - residuals N ? Euclidean length of the residual difference between the atomic displacements rmsampdisp N ? description rmsampsvd N ? description RMS_f N ? description RMS_trim_f N ? description s N ? description scorr N ? S-correlation: Normal mode statistic screwAxisToCentroidDistance N ? description screwAxisX N ? description screwAxisY N ? description screwAxisZ N ? description seqident N ? Sequence identity Sstr_f N ? description Sstr_trim_f N ? description submitted_by N ? The submitter of the morph_id submitted_email N ? The email of the submitter SWS_n N ? Smith-Waterman score for alignment TransX N ? X component of "translation" statistic TransY N ? Y component of "translation" statistic TransZ N ? Z component of "translation" statistic x0ToCentroidDistance N ? Distance between screw-axis (x0) & centroid x0X N ? X component of "x0ToCentroidDistance" statistic x0Y N ? Y component of "x0ToCentroidDistance" statistic x0Z N ? Z component of "x0ToCentroidDistance" statistic
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Copyright 1995-2005 M. Gerstein, W. Krebs, S. Flores, N. Echols, and others
Email: Mark.Gerstein _at_ yale.edu